Heng Li
7b166e5296
pass item index to function calls
...
kt_for() to be replaced by more complex but more versatile APIs
2013-10-09 23:52:13 -04:00
Heng Li
eff7d1ee9d
don't need this now, but maybe in future
2013-10-09 14:26:17 -04:00
Heng Li
326cf675b2
fixed a dead loop when n_threads==1
2013-10-09 12:51:34 -04:00
Heng Li
82fd9293bb
bugfix: wrong integer type
...
but it does not really matter
2013-10-09 11:55:39 -04:00
Heng Li
3d95aad202
no effective changes
2013-10-09 11:50:27 -04:00
Heng Li
0978a8b055
documentation; better var names
2013-10-09 11:47:29 -04:00
Heng Li
6e214f00ea
let the main thread help the unfinished workers
2013-10-09 11:26:20 -04:00
Heng Li
28e53a3848
more comments
2013-10-09 11:01:28 -04:00
Heng Li
1954f3fca1
forgot to remove debugging code
...
which causes bugs
2013-10-08 23:08:18 -04:00
Heng Li
98b1434a72
fixed a typo
2013-10-08 23:01:44 -04:00
Heng Li
f8e0c2f23e
Merge branch 'master' of github.com:attractivechaos/klib
2013-10-08 22:52:48 -04:00
Heng Li
cb9c88c84e
for C++ compatibility
2013-10-08 22:45:29 -04:00
Heng Li
1b4415cd9c
use test-and-set for spin lock
2013-10-08 20:54:22 -04:00
Heng Li
2dd629bbce
working, but locking is slow
2013-10-08 20:45:40 -04:00
Heng Li
b8c7056ac9
remove
2013-10-08 16:55:28 -04:00
Heng Li
0a83546ec1
parallelize simple "for" loops
2013-10-08 16:55:04 -04:00
Heng Li
b5d9c93aad
parallelize simple "for" loops
2013-10-08 16:50:21 -04:00
Heng Li
57dc7b07c9
removed incorrect comments
2013-07-24 11:19:38 -04:00
Heng Li
386c57514d
revert a change to ks_resize()
...
due to a mistaken merge
2013-07-24 11:12:19 -04:00
Heng Li
bbf1648ac6
Merge pull request #21 from jmarshall/kstring
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Make ks_resize(&kstr,kstr.l+1) useful for ensuring the string is allocated and NUL-terminated
2013-07-24 07:42:23 -07:00
John Marshall
7e277d8a8b
Add kstring_t init/destroy documentation
...
Ideally these could be provided as ks_init()/ks_destroy(),
but those names are already in use with kstream_t.
2013-07-24 14:30:57 +01:00
John Marshall
99ca35977c
Only canonicalise if there is room, and add docs
...
We could increment SIZE to ensure there would be room, but that would
disadvantage people using kstrings for binary data in power-of-2-sized
blocks. Instead document that SIZE=KS.l+1 will ensure NUL-termination.
This fixes a bug in the previous version when the l<m invariant does not
hold (kputc_()/etc and manual manipulation only maintain the weaker l<=m);
hattip Rob Davies.
2013-07-24 14:08:25 +01:00
John Marshall
e1c0050667
ks_resize() canonicalises the stored string
...
It ensures the string is NUL-terminated, especially in the case that
ks_resize(&kstr,1) has been used on a newly-created kstring_t to ensure
that kstr.s is not NULL.
2013-07-23 16:16:19 +01:00
Heng Li
41bff76244
Merge pull request #20 from jmarshall/kputl
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Bug fix for kputl(), and kputw()/kputl() tests
2013-07-23 04:50:21 -07:00
John Marshall
d47fc9def4
Fix kputl(LONG_MIN) bug
...
Use an explicitly unsigned long, and do any negation as that type.
Make similar changes to kputw(), as the code is clearer.
2013-07-23 11:56:15 +01:00
John Marshall
c95f147e67
Add kputw() and kputl() tests
2013-07-22 16:07:45 +01:00
Heng Li
cad4c57d97
Merge pull request #19 from jkbonfield/master
...
Error checking + updates from htslib
2013-07-19 10:58:43 -07:00
James Bonfield
133bb25dfe
Merged with attractivechaos/klib:
...
- add upstream kvsprintf and rework ksprintf
- add upstream printf attribute checks
- use our kputw (has MIN_INT bug fix)
- keep our extra functions (kputc_, kputsn_, kputl)
Added ks_str and ks_len functions for tidier manipulation of
internals.
Added error checking to all functions that allocate memory and could
potentially fail; ie return EOF or negative values as per stdio
equivalents.
2013-07-17 17:51:13 +01:00
Attractive Chaos
af0848b627
Merge pull request #18 from sciascid/master
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Document -1 extra return code in kh_put().
2013-07-15 07:36:39 -07:00
Daniele Sciascia
70c0e39705
Document -1 extra return code in kh_put().
2013-07-13 21:22:53 +02:00
Attractive Chaos
fff70758ed
Merge pull request #15 from yorhel/master
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kstring printf improvements
2013-05-08 08:27:26 -07:00
Yorhel
9f49ae119c
kstring: Add printf format attribute to kvsprintf() and ksprintf()
...
This allows compile-time detection of format-string related bugs.
Although the macros only check for the GCC version, clang (and perhaps
other compilers too) have these macros defined and can recognize
the formatting attributes as well.
2013-05-07 12:05:25 +02:00
Yorhel
e44075f866
kstring: Add kvsprintf()
2013-05-07 11:56:49 +02:00
Heng Li
0afbad198c
khash-0.2.8: use quadratic probing
2013-05-02 17:34:11 -04:00
Heng Li
c944fdf868
change hash set to hash map
2013-05-02 16:25:50 -04:00
Heng Li
605507576b
Merge branch 'master' of github.com:attractivechaos/klib
2013-05-02 15:51:45 -04:00
Heng Li
7452f78d6a
test performance given packed struct
2013-05-02 15:51:14 -04:00
Attractive Chaos
343ef09d44
Merge pull request #14 from zjf/patch-1
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typo correction
2013-04-01 07:44:14 -07:00
Jianfeng Zhu
e88599d5ca
typo correction
2013-04-01 22:41:48 +08:00
Heng Li
e2080f6cce
Merge branch 'master' of github.com:attractivechaos/klib
2013-02-20 20:14:35 -05:00
Heng Li
2763fa6d4c
bugfix: point address changes
2013-02-20 20:14:04 -05:00
Attractive Chaos
8213e5bbba
Merge pull request #12 from leecbaker/master
...
Minor spelling fixes
2013-02-16 05:30:16 -08:00
Lee Baker
1875d95379
Spelling corrections
2013-02-13 15:07:00 -06:00
Heng Li
0636685258
bugfix: 2nd best score not set
...
because I was comparing (uint32_t)-1 with a positive integer...
2013-02-12 17:37:14 -05:00
Heng Li
fd9cee5312
Merge branch 'master' of github.com:attractivechaos/klib
2013-02-12 16:21:12 -05:00
Heng Li
d4c28fd9c6
added NW and SW-extension; backported from bwa
2013-02-12 16:20:36 -05:00
Attractive Chaos
8ad7eab205
Merge pull request #11 from leecbaker/master
...
Minor spelling and grammar corrections in the readme
2013-02-01 13:11:55 -08:00
Lee Baker
97f9ce5ad2
Spelling / grammar corrections in the README.
2013-02-01 15:08:49 -06:00
Heng Li
04fc53768f
minor gramartical improvement
2013-01-27 21:20:19 -05:00
Heng Li
6e848532ec
fixed typo
2013-01-27 21:17:37 -05:00
