12 Commits

Author	SHA1	Message	Date
Heng Li	d4c28fd9c6	added NW and SW-extension; backported from bwa	2013-02-12 16:20:36 -05:00
Heng Li	971df6ec5d	another bug in u8; allow **qry set to NULL	2012-03-02 18:52:38 -05:00
Heng Li	2247ce00d8	stop if >= not ==	2012-03-02 17:57:13 -05:00
Heng Li	657be682bc	refine the ksw APIs	2012-03-02 17:48:42 -05:00
Heng Li	509017b53a	find the start positions; fixed a bug in example	2012-03-02 15:52:44 -05:00
Heng Li	a138829abb	added brief documentation	2011-09-10 22:15:51 -04:00
Heng Li	c982d82d84	find the 2nd best score; still imperfect...	2011-05-08 00:21:18 -04:00
Heng Li	93f537223b	keep the ending position	2011-05-07 16:56:00 -04:00
Heng Li	9dcbb97e0e	added license and a couple of comments	2011-05-05 15:39:04 -04:00
Heng Li	b9ba62ec2c	Added a simple CLI	2011-05-05 15:29:02 -04:00
Heng Li	502b7bb063	allocate query profile in one memory block	2011-05-05 13:38:26 -04:00
Heng Li	e7d8f752d9	SSE2 Smith-Waterman; unfinished	2011-05-05 12:42:29 -04:00