2020-05-26 00:02:45 +03:00
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/**
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* @file
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2020-06-05 19:20:37 +03:00
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* \brief Library functions to compute [QR
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* decomposition](https://en.wikipedia.org/wiki/QR_decomposition) of a given
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* matrix.
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2020-06-06 21:51:49 +03:00
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* \author [Krishna Vedala](https://github.com/kvedala)
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2020-05-26 00:02:45 +03:00
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*/
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#ifndef QR_DECOMPOSE_H
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#define QR_DECOMPOSE_H
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#include <math.h>
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#include <stdio.h>
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2020-05-26 01:27:41 +03:00
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#include <stdlib.h>
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2020-06-05 19:20:37 +03:00
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#ifdef _OPENMP
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#include <omp.h>
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#endif
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2020-05-26 00:02:45 +03:00
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/**
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* function to display matrix on stdout
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*/
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void print_matrix(double **A, /**< matrix to print */
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int M, /**< number of rows of matrix */
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int N) /**< number of columns of matrix */
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{
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for (int row = 0; row < M; row++)
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{
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for (int col = 0; col < N; col++)
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printf("% 9.3g\t", A[row][col]);
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putchar('\n');
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}
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putchar('\n');
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}
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/**
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* Compute dot product of two vectors of equal lengths
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*
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* If \f$\vec{a}=\left[a_0,a_1,a_2,...,a_L\right]\f$ and
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* \f$\vec{b}=\left[b_0,b_1,b_1,...,b_L\right]\f$ then
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* \f$\vec{a}\cdot\vec{b}=\displaystyle\sum_{i=0}^L a_i\times b_i\f$
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*
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* \returns \f$\vec{a}\cdot\vec{b}\f$
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2020-06-05 19:20:37 +03:00
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*/
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2020-05-26 00:02:45 +03:00
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double vector_dot(double *a, double *b, int L)
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{
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double mag = 0.f;
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2020-06-05 19:20:37 +03:00
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int i;
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#ifdef _OPENMP
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// parallelize on threads
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#pragma omp parallel for reduction(+ : mag)
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#endif
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for (i = 0; i < L; i++)
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2020-05-26 00:02:45 +03:00
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mag += a[i] * b[i];
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return mag;
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}
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/**
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* Compute magnitude of vector.
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*
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* If \f$\vec{a}=\left[a_0,a_1,a_2,...,a_L\right]\f$ then
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* \f$\left|\vec{a}\right|=\sqrt{\displaystyle\sum_{i=0}^L a_i^2}\f$
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*
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* \returns \f$\left|\vec{a}\right|\f$
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2020-06-05 19:20:37 +03:00
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*/
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2020-05-26 00:02:45 +03:00
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double vector_mag(double *vector, int L)
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{
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double dot = vector_dot(vector, vector, L);
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return sqrt(dot);
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}
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/**
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* Compute projection of vector \f$\vec{a}\f$ on \f$\vec{b}\f$ defined as
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* \f[\text{proj}_\vec{b}\vec{a}=\frac{\vec{a}\cdot\vec{b}}{\left|\vec{b}\right|^2}\vec{b}\f]
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*
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* \returns NULL if error, otherwise pointer to output
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2020-06-05 19:20:37 +03:00
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*/
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2020-05-26 00:02:45 +03:00
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double *vector_proj(double *a, double *b, double *out, int L)
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{
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const double num = vector_dot(a, b, L);
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const double deno = vector_dot(b, b, L);
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if (deno == 0) /*! check for division by zero */
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return NULL;
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const double scalar = num / deno;
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2020-06-05 19:20:37 +03:00
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int i;
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#ifdef _OPENMP
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// parallelize on threads
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#pragma omp for
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#endif
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for (i = 0; i < L; i++)
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2020-05-26 00:02:45 +03:00
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out[i] = scalar * b[i];
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return out;
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}
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/**
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* Compute vector subtraction
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*
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* \f$\vec{c}=\vec{a}-\vec{b}\f$
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*
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* \returns pointer to output vector
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2020-06-05 19:20:37 +03:00
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*/
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2020-05-26 00:02:45 +03:00
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double *vector_sub(double *a, /**< minuend */
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double *b, /**< subtrahend */
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double *out, /**< resultant vector */
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int L /**< length of vectors */
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)
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{
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2020-06-05 19:20:37 +03:00
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int i;
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#ifdef _OPENMP
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// parallelize on threads
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#pragma omp for
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#endif
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for (i = 0; i < L; i++)
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2020-05-26 00:02:45 +03:00
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out[i] = a[i] - b[i];
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return out;
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}
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/**
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2020-05-29 23:23:24 +03:00
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* Decompose matrix \f$A\f$ using [Gram-Schmidt
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*process](https://en.wikipedia.org/wiki/QR_decomposition).
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2020-05-26 00:02:45 +03:00
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*
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* \f{eqnarray*}{
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2020-05-29 23:23:24 +03:00
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* \text{given that}\quad A &=&
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*\left[\mathbf{a}_1,\mathbf{a}_2,\ldots,\mathbf{a}_{N-1},\right]\\
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* \text{where}\quad\mathbf{a}_i &=&
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*\left[a_{0i},a_{1i},a_{2i},\ldots,a_{(M-1)i}\right]^T\quad\ldots\mbox{(column
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*vectors)}\\
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* \text{then}\quad\mathbf{u}_i &=& \mathbf{a}_i
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*-\sum_{j=0}^{i-1}\text{proj}_{\mathbf{u}_j}\mathbf{a}_i\\
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* \mathbf{e}_i &=&\frac{\mathbf{u}_i}{\left|\mathbf{u}_i\right|}\\
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* Q &=& \begin{bmatrix}\mathbf{e}_0 & \mathbf{e}_1 & \mathbf{e}_2 & \dots &
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*\mathbf{e}_{N-1}\end{bmatrix}\\
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* R &=& \begin{bmatrix}\langle\mathbf{e}_0\,,\mathbf{a}_0\rangle &
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*\langle\mathbf{e}_1\,,\mathbf{a}_1\rangle &
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*\langle\mathbf{e}_2\,,\mathbf{a}_2\rangle & \dots \\
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* 0 & \langle\mathbf{e}_1\,,\mathbf{a}_1\rangle &
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*\langle\mathbf{e}_2\,,\mathbf{a}_2\rangle & \dots\\
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2020-05-26 00:02:45 +03:00
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* 0 & 0 & \langle\mathbf{e}_2\,,\mathbf{a}_2\rangle & \dots\\
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* \vdots & \vdots & \vdots & \ddots
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* \end{bmatrix}\\
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* \f}
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*/
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2020-05-26 00:02:45 +03:00
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void qr_decompose(double **A, /**< input matrix to decompose */
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double **Q, /**< output decomposed matrix */
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double **R, /**< output decomposed matrix */
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int M, /**< number of rows of matrix A */
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int N /**< number of columns of matrix A */
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)
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{
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double *col_vector = (double *)malloc(M * sizeof(double));
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double *col_vector2 = (double *)malloc(M * sizeof(double));
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double *tmp_vector = (double *)malloc(M * sizeof(double));
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2020-05-29 23:23:24 +03:00
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for (int i = 0; i < N;
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i++) /* for each column => R is a square matrix of NxN */
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2020-05-26 00:02:45 +03:00
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{
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2020-06-05 19:20:37 +03:00
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int j;
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#ifdef _OPENMP
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// parallelize on threads
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#pragma omp for
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#endif
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for (j = 0; j < i; j++) /* second dimension of column */
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R[i][j] = 0.; /* make R upper triangular */
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/* get corresponding Q vector */
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#ifdef _OPENMP
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// parallelize on threads
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#pragma omp for
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#endif
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for (j = 0; j < M; j++)
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{
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tmp_vector[j] = A[j][i]; /* accumulator for uk */
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col_vector[j] = A[j][i];
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}
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2020-06-05 19:20:37 +03:00
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for (j = 0; j < i; j++)
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2020-05-26 00:02:45 +03:00
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{
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for (int k = 0; k < M; k++)
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col_vector2[k] = Q[k][j];
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vector_proj(col_vector, col_vector2, col_vector2, M);
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vector_sub(tmp_vector, col_vector2, tmp_vector, M);
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}
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double mag = vector_mag(tmp_vector, M);
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2020-06-05 19:20:37 +03:00
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#ifdef _OPENMP
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// parallelize on threads
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#pragma omp for
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#endif
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for (j = 0; j < M; j++)
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2020-05-26 00:02:45 +03:00
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Q[j][i] = tmp_vector[j] / mag;
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/* compute upper triangular values of R */
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for (int kk = 0; kk < M; kk++)
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col_vector[kk] = Q[kk][i];
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for (int k = i; k < N; k++)
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{
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for (int kk = 0; kk < M; kk++)
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col_vector2[kk] = A[kk][k];
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R[i][k] = vector_dot(col_vector, col_vector2, M);
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}
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}
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free(col_vector);
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free(col_vector2);
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free(tmp_vector);
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}
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#endif // QR_DECOMPOSE_H
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